bigbio/proteomics-sample-metadata

Metabolomnics technology type

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#702 opened on Apr 22, 2024

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Specificationenhancementhelp wantedsdrf-metabolomics

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Description

We have two technology types for metabolomics:

  • LC-MS-based metabolomics: @mmattano used (https://github.com/bigbio/proteomics-sample-metadata/pull/680) in the PR the EDAM ontology NT=LC-MS-based metabolomics;AC=EDAM:3172 we should move this term to PSI-MS or PRIDE ontologies.
  • NMR metabolomics: Similar to the previous term, we should move it into PSI-MS or PRIDE ontologies. The main reason is because we use these two ontologies to handle data properties (comment).

To be discussed.

Contributor guide

Research direction
Identify the correct PSI MS or PRIDE ontology terms for LC MS based metabolomics and NMR metabolomics. Discuss and propose changes to move the terms accordingly.
Tech stack
None
Domain
data
Issue type
Refactor
DifficultyEstimated implementation difficulty for a new contributor, from 1 for very small changes to 5 for expert-level work.
2
Estimated timeA rough time range for an experienced contributor to investigate, implement, test, and prepare a pull request.
1-3 hours
Activity statusHow available the issue appears right now: fresh, active, stale, blocked, or waiting on maintainer input.
Active
ClarityHow clearly the issue explains the expected change, acceptance criteria, and next step.
Mostly clear
Prerequisites
None
Newbie friendlinessA 1-100 score estimating how approachable this issue is for first-time contributors.
70