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nf-core repositories

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nf-core/crisprvarNextflow

[WIP] Evaluate outcomes from genome editing experiments

Last commit Jul 10, 2019

 (5 stars) (5 forks) (0 indexed issues) (0 open good first issues)
nf-core/deepmodeloptimNextflow

Stochastic Testing and Input Manipulation for Unbiased Learning Systems

Last commit Apr 30, 2026

 (31 stars) (15 forks) (6 indexed issues) (6 open good first issues)
nf-core/genomeqcNextflow

Compare the quality of multiple genomes, along with their annotations.

Last commit Jul 24, 2026

 (24 stars) (24 forks) (3 indexed issues) (3 open good first issues)
nf-core/hlatypingNextflow

Precision HLA typing from next-generation sequencing data

Last commit Jul 10, 2026

 (81 stars) (37 forks) (0 indexed issues) (0 open good first issues)
nf-core/kmermaidNextflow

k-mer similarity analysis pipeline

Last commit Jan 13, 2025

 (22 stars) (15 forks) (0 indexed issues) (0 open good first issues)
nf-core/proteinannotatorNextflow

Generation of sequence-level annotations for amino acid sequences

Last commit May 8, 2026

 (12 stars) (13 forks) (0 indexed issues) (0 open good first issues)
nf-core/variantprioritizationNextflow

Bioinformatics analysis pipeline for the functional annotation and translation of somatic SNVs/InDels and copy number abberations for precision cancer medicine using Personal Cancer Genome Reporter (PCGR). The pipeline offers germline SNVs/INDELS intepretation and annotation using Cancer Predisposition Sequencing Reporter (CPSR).

Last commit Jun 3, 2026

 (15 stars) (12 forks) (0 indexed issues) (0 open good first issues)