sanger-tol/sequencecomposition

Tandem repeats from `trf`

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#17 opened on Jun 2, 2024

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good first issuehelp wanted

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Description

Copy the functionality from the GDA pipeline. Software available at https://github.com/Benson-Genomics-Lab/TRF.

Contributor guide

Research direction
Inspect the GDA pipeline source to understand how TRF is used for tandem repeats, then locate the corresponding process structure in this repository to add a similar step. Verify whether TRF is already included in any container or needs to be added.
Tech stack
shell
Domain
dataanalytics
Issue type
Feature
DifficultyEstimated implementation difficulty for a new contributor, from 1 for very small changes to 5 for expert-level work.
3
Estimated timeA rough time range for an experienced contributor to investigate, implement, test, and prepare a pull request.
1-2 days
Activity statusHow available the issue appears right now: fresh, active, stale, blocked, or waiting on maintainer input.
Active
ClarityHow clearly the issue explains the expected change, acceptance criteria, and next step.
Mostly clear
Prerequisites
GitNextflow
Newbie friendlinessA 1-100 score estimating how approachable this issue is for first-time contributors.
55