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MakeFile:154: ref.fa.fai error 1
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Repository Issues
tseemann/nullarbor
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
Issues
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Query: Mixed sample - separate reads?
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ERROR: Could not find .aligned.fa/.vcf in 'file' make: *** [Makefile:108: core.aln] Error 2
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Error - report not written and empty samples
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makefile exits with error 2 --> no reports
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including low coverage sequences causes nullarbor to exit prematurely without error message
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